Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0789137 with 2 members (chromodomain helicase DNA binding protein)

Metazoa / Eumetazoa / Bilateria / Protostomia / Ecdysozoa / Nematoda / Dorylaimia / Trichinella

Completeness score: 1.00

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This HOG has 55 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0789137.8e	261	151	chromodomain helicase DNA binding protein
2	HOG:E0789137	238	645	chromodomain helicase DNA binding protein
3	HOG:E0789137.8b	179	137	chromodomain helicase DNA binding protein
4	HOG:E0789137.8d.8b	120	63	chromodomain helicase DNA binding protein
5	HOG:E0789137.8d	100	166	chromodomain helicase DNA binding protein
6	HOG:E0789137.8b.5b	72	44	chromodomain helicase DNA binding protein
7	HOG:E0789137.8d.6b	71	46	chromodomain helicase DNA binding protein
8	HOG:E0789137.8a	62	44	chromodomain helicase DNA binding protein
9	HOG:E0789137.8a.4b	10	5	chromodomain helicase DNA binding protein
10	HOG:E0789137.3b	8	5	chromodomain helicase DNA binding protein
11	HOG:E0789137.8e.9a	6	3	chromodomain helicase DNA binding protein
12	HOG:E0789137.8d.6b.4b	6	3	chromodomain helicase DNA binding protein
13	HOG:E0789137.8e.9b	4	2	chromodomain helicase DNA binding protein
14	HOG:E0789137.8e.10b	4	2	chromodomain helicase DNA binding protein
15	HOG:E0789137.8e.10a	4	2	chromodomain helicase DNA binding protein
16	HOG:E0789137.8d.6b.5b	4	2	chromodomain helicase DNA binding protein
17	HOG:E0789137.8d.6b.5a	4	2	chromodomain helicase DNA binding protein
18	HOG:E0789137.8d.6b.4a	4	2	chromodomain helicase DNA binding protein
19	HOG:E0789137.8d.6a	4	2	chromodomain helicase DNA binding protein
20	HOG:E0789137.8b.5b.3a	4	2	chromodomain helicase DNA binding protein
21	HOG:E0789137.8a.3b	4	2	chromodomain helicase DNA binding protein
22	HOG:E0789137.3a	4	2	chromodomain helicase DNA binding protein
23	HOG:E0789137.8f	2	1	chromodomain helicase DNA binding protein
24	HOG:E0789137.8e.12b	2	1	chromodomain helicase DNA binding protein
25	HOG:E0789137.8e.12a	2	1	chromodomain helicase DNA binding protein

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